LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011696
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-53
0.231
0
9mer
32-40
0.230
0
9mer
104-115
0.229
0
9mer
2192-2204
0.228
0
9mer
2090-2103
0.217
0
9mer
151-167
0.214
0
XLOC_002204
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004331
Biotype: transcript isomorph
Gene id: XLOC_002204
Gene Name: XLOC_002204
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
321-329
0.214
1
9mer
2113-2121
0.213
0
9mer
2180-2194
0.213
0
9mer
2119-2133
0.212
0
9mer
185-203
0.200
0
9mer
226-238
0.188
0
9mer
236-251
0.185
0
9mer
2011-2019
0.185
0
9mer
211-223
0.182
0
9mer
258-266
0.179
0
9mer
1978-1993
0.177
0
9mer
305-322
0.174
0
8mer
2221-2227
0.165
0
8mer
2226-2232
0.165
0
9mer
366-374
0.165
0
8mer
2231-2237
0.159
0
9mer
413-421
0.159
0
9mer
1849-1860
0.158
0
9mer
1829-1845
0.157
0
8mer
80-86
0.156
0
9mer
1863-1875
0.155
0
8mer
123-133
0.149
0
9mer
434-449
0.147
0
9mer
461-476
0.144
0
9mer
429-436
0.141
0
9mer
496-504
0.140
0
8mer
184-208
0.139
0
8mer
192-213
0.133
0
9mer
1735-1750
0.132
0
9mer
509-527
0.131
0
8mer
222-228
0.130
0
9mer
591-599
0.130
0
8mer
293-299
0.128
1
9mer
1722-1737
0.128
0
8mer
2027-2037
0.128
0
8mer
262-268
0.126
1
9mer
621-637
0.124
0
8mer
1992-1998
0.122
0
9mer
1632-1647
0.120
0
9mer
1621-1629
0.119
0
9mer
602-617
0.119
0
9mer
29-44
0.116
0
9mer
1572-1580
0.116
0
9mer
665-673
0.115
0
9mer
97-105
0.113
0
9mer
1583-1598
0.113
0
8mer
1946-1957
0.113
0
9mer
72-84
0.109
0
8mer
373-379
0.107
0
9mer
768-788
0.107
0
9mer
708-716
0.106
0
8mer
1849-1865
0.103
0
9mer
1432-1440
0.103
0
8mer
1761-1778
0.103
0
9mer
42-50
0.101
0
9mer
1522-1536
0.099
0
9mer
1475-1497
0.098
0
9mer
800-808
0.098
0
9mer
1469-1484
0.096
0
9mer
308-323
0.096
0
9mer
749-757
0.095
0
9mer
858-874
0.095
0
9mer
1377-1385
0.093
0
8mer
530-555
0.091
0
9mer
1463-1471
0.090
0
9mer
880-888
0.086
0
8mer
598-604
0.080
0
8mer
635-652
0.079
0
8mer
136-149
0.078
0
9mer
952-972
0.078
0
9mer
939-947
0.078
0
8mer
1628-1634
0.077
0
8mer
682-688
0.075
0
9mer
970-985
0.074
0
9mer
1097-1105
0.073
0
9mer
1228-1236
0.072
0
8mer
1579-1585
0.072
0
8mer
756-762
0.069
0
9mer
1319-1334
0.069
0
9mer
1174-1189
0.065
0
9mer
1161-1176
0.065
0
9mer
1151-1163
0.064
0
8mer
1300-1321
0.059
0
8mer
830-836
0.059
0
8mer
908-921
0.057
0
8mer
835-841
0.056
0
9mer
121-129
0.056
Not Conserved
8mer
1249-1269
0.053
0
8mer
1374-1390
0.053
0
8mer
239-245
0.053
0
8mer
1043-1049
0.052
0
9mer
82-90
0.052
Not Conserved
8mer
984-990
0.048
0
9mer
60-68
0.048
Not Conserved
9mer
19-31
0.048
Not Conserved
9mer
6-21
0.044
Not Conserved
8mer
1187-1197
0.044
0
7mer
1947-1952
0.042
0
9mer
66-81
0.041
Not Conserved
9mer
1886-1901
0.036
Not Conserved
9mer
62-74
0.036
Not Conserved
8mer
732-746
0.035
0
9mer
1968-1980
0.035
Not Conserved
8mer
2149-2159
0.034
Not Conserved
9mer
1929-1937
0.034
Not Conserved
7mer
1761-1773
0.033
0
9mer
267-282
0.032
Not Conserved
9mer
1873-1888
0.029
Not Conserved
8mer
280-286
0.027
Not Conserved
9mer
1513-1524
0.019
Not Conserved
7mer
895-916
0.019
0
7mer
898-903
0.018
0
9mer
726-734
0.018
Not Conserved
8mer
57-63
0.018
Not Conserved
7mer
945-960
0.017
0
7mer
1495-1504
0.017
0
6mer
305-331
0.016
0
9mer
671-683
0.016
Not Conserved
6mer
244-264
0.015
1
9mer
816-831
0.014
Not Conserved
9mer
1133-1145
0.013
Not Conserved
8mer
1708-1724
0.010
Not Conserved
6mer
481-486
0.010
0
8mer
690-698
0.009
Not Conserved
8mer
1133-1153
0.008
Not Conserved
8mer
908-926
0.007
Not Conserved
7mer
1339-1344
0.003
Not Conserved
6mer
1709-1714
0.002
Not Conserved
chr22-38_28785274-29006793.1
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30712-30738
0.016
1
8mer
153607-153630
0.014
1
8mer
203911-203934
0.013
1
8mer
18674-18680
0.012
1
8mer
154580-154587
0.011
1
8mer
259113-259136
0.010
1
7mer
104097-104110
0.010
2
7mer
225734-225759
0.009
0
7mer
234521-234546
0.008
0
7mer
238410-238435
0.008
1
8mer
66324-66346
0.008
1
7mer
239304-239320
0.008
0
7mer
65203-65227
0.008
0
7mer
231282-231306
0.007
0
7mer
55887-55912
0.007
1
7mer
234948-234972
0.007
Not Conserved
8mer
48556-48575
0.007
1
7mer
103126-103150
0.006
0
7mer
209673-209699
0.006
1
7mer
253630-253652
0.006
0
7mer
55142-55152
0.006
2
7mer
14539-14554
0.006
Not Conserved
7mer
80514-80538
0.006
0
7mer
197429-197452
0.006
0
7mer
172201-172206
0.005
1
7mer
203023-203047
0.005
Not Conserved
7mer
257195-257212
0.005
0
7mer
223012-223030
0.005
1
7mer
251139-251163
0.005
0
7mer
89910-89924
0.005
1
7mer
121666-121680
0.005
0
8mer
181855-181873
0.005
0
7mer
24403-24428
0.004
1
8mer
112444-112464
0.004
1
7mer
99449-99465
0.004
3
7mer
124699-124717
0.004
4
7mer
263050-263064
0.004
1
7mer
195989-196009
0.004
4
7mer
68927-68950
0.004
1
7mer
188957-188981
0.004
0
7mer
259748-259773
0.004
1
8mer
159859-159878
0.004
0
7mer
171572-171597
0.004
1
7mer
175640-175665
0.003
2
8mer
258288-258312
0.003
1
6mer
226104-226120
0.003
5
7mer
223242-223265
0.003
1
7mer
214594-214614
0.003
1
7mer
41384-41396
0.003
1
7mer
77403-77427
0.003
0
7mer
240162-240186
0.002
0
6mer
8775-8796
0.002
1
6mer
38166-38188
0.002
2
7mer
169941-169960
0.002
0
6mer
255643-255668
0.002
1
6mer
158977-158999
0.002
1
6mer
53512-53537
0.002
2
6mer
210328-210355
0.002
4
6mer
165403-165421
0.002
4
6mer
113729-113753
0.002
1
6mer
44057-44071
0.002
1
6mer
60891-60914
0.002
1
7mer
216154-216179
0.002
3
6mer
47640-47661
0.002
6
6mer
14964-14982
0.002
1
6mer
43726-43742
0.002
1
7mer
122784-122795
0.002
0
6mer
252132-252155
0.002
1
6mer
50251-50268
0.002
0
6mer
174506-174526
0.002
0
6mer
146460-146483
0.002
1
6mer
197784-197805
0.002
1
6mer
184093-184116
0.002
1
7mer
6111-6131
0.002
1
6mer
178457-178479
0.002
0
6mer
170861-170884
0.002
1
6mer
73336-73353
0.002
2
6mer
234117-234136
0.002
1
6mer
37543-37558
0.002
1
6mer
159476-159492
0.002
1
6mer
262169-262192
0.002
1
7mer
158365-158381
0.002
0
6mer
226756-226772
0.002
0
6mer
231730-231748
0.002
0
6mer
237944-237967
0.002
0
6mer
79678-79689
0.002
0
6mer
151495-151520
0.002
1
6mer
206947-206964
0.002
1
6mer
22538-22560
0.002
1
6mer
121516-121539
0.002
0
6mer
17361-17379
0.002
1
7mer
265961-265979
0.002
1
6mer
250978-250996
0.002
0
6mer
77246-77270
0.002
0
6mer
52545-52571
0.002
1
6mer
247961-247984
0.002
0
6mer
115304-115319
0.002
1
6mer
220577-220585
0.002
2
6mer
26215-26223
0.002
1
6mer
60294-60317
0.001
0
6mer
194512-194526
0.001
0
6mer
2083-2095
0.001
3
6mer
35896-35904
0.001
1
6mer
230937-230953
0.001
0
6mer
130111-130136
0.001
1
6mer
65597-65606
0.001
0
7mer
232831-232856
0.001
1
6mer
126395-126412
0.001
1
6mer
145203-145220
0.001
Not Conserved
6mer
5454-5470
0.001
1
6mer
234355-234378
0.001
0
6mer
65041-65064
0.001
1
6mer
169791-169801
0.001
0
6mer
260382-260405
0.001
1
6mer
188442-188462
0.001
Not Conserved
6mer
109729-109752
0.001
1
6mer
250298-250321
0.001
Not Conserved
6mer
197270-197293
0.001
0
6mer
78570-78592
0.001
1
6mer
239654-239679
0.001
0
6mer
180916-180939
0.001
1
6mer
96851-96873
0.001
1
6mer
232827-232851
0.001
1
6mer
251628-251647
0.001
0
6mer
111319-111336
0.001
1
6mer
84271-84291
0.001
2
6mer
161190-161208
0.001
0
6mer
220060-220081
0.001
3
6mer
206181-206204
0.001
Not Conserved
6mer
202378-202395
0.001
Not Conserved
6mer
24154-24168
0.001
0
6mer
74168-74182
0.001
0
6mer
212146-212167
0.001
2
6mer
113489-113499
0.001
0
6mer
233016-233039
0.001
0
6mer
12452-12475
0.001
3
6mer
135183-135206
0.001
1
6mer
258288-258307
0.001
0
6mer
253924-253936
0.001
1
6mer
159684-159707
0.001
0
6mer
160726-160742
0.001
1
6mer
61665-61692
0.001
0
6mer
63084-63105
0.001
1
6mer
152694-152721
0.001
0
7mer
263744-263767
0.001
Not Conserved
6mer
125193-125220
0.001
1
6mer
123370-123390
0.001
1
6mer
34391-34411
0.001
1
6mer
2274-2292
0.001
1
6mer
26889-26914
0.001
0
6mer
185145-185168
0.001
1
6mer
228950-228962
0.001
0
6mer
15610-15633
0.001
1
6mer
207919-207943
0.001
1
6mer
221543-221559
0.001
0
6mer
24253-24257
0.001
1
6mer
154700-154720
0.001
0
6mer
122708-122725
0.001
0
6mer
151575-151591
0.001
3
6mer
227182-227206
0.001
1
6mer
184316-184335
0.001
1
6mer
75692-75719
0.001
0
6mer
52842-52856
0.001
0
6mer
59941-59961
0.001
1
6mer
109478-109496
0.001
1
6mer
182832-182852
0.001
0
6mer
128025-128047
0.001
0
6mer
253085-253097
0.001
0
6mer
264228-264247
0.001
0
6mer
140494-140515
0.001
1
6mer
248309-248329
0.001
0
6mer
177068-177092
0.001
1
6mer
255336-255355
0.001
1
6mer
24178-24191
0.001
1
6mer
232375-232402
0.001
0
6mer
30774-30799
0.001
1
6mer
113521-113525
0.001
1
6mer
125946-125970
0.001
1
6mer
223069-223094
0.001
1
6mer
169395-169419
0.001
0
6mer
35965-35977
0.001
1
7mer
264228-264251
0.001
0
6mer
50257-50275
0.000
2
6mer
209692-209715
0.000
Not Conserved
6mer
169967-169984
0.000
0
RP3-323A16.1
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
28097-28121
0.028
1
9mer
46707-46724
0.024
1
8mer
53147-53173
0.021
1
8mer
22922-22929
0.015
2
7mer
36225-36247
0.008
1
7mer
35480-35504
0.008
Not Conserved
7mer
11074-11099
0.008
1
7mer
48192-48208
0.006
0
8mer
37964-37987
0.006
2
9mer
4822-4838
0.006
0
7mer
18456-18480
0.006
0
6mer
54016-54027
0.005
1
7mer
10907-10930
0.004
0
7mer
18874-18890
0.003
0
7mer
11727-11745
0.003
2
7mer
41627-41649
0.003
0
6mer
37274-37300
0.002
3
6mer
26630-26644
0.002
1
6mer
8684-8704
0.002
0
7mer
48019-48042
0.002
0
6mer
11460-11482
0.002
1
6mer
251-275
0.002
1
6mer
1642-1665
0.002
0
7mer
29269-29289
0.002
0
6mer
27271-27287
0.002
1
8mer
36245-36256
0.002
1
6mer
40213-40240
0.002
2
6mer
39324-39342
0.002
1
6mer
44851-44874
0.002
0
6mer
1076-1096
0.002
1
6mer
18289-18312
0.001
0
6mer
41187-41205
0.001
1
6mer
24190-24205
0.001
Not Conserved
6mer
25874-25901
0.001
0
6mer
12976-12998
0.001
3
6mer
29463-29485
0.001
1
6mer
1231-1254
0.001
0
6mer
25023-25040
0.001
1
6mer
52782-52806
0.001
0
6mer
48019-48038
0.001
0
6mer
14169-14196
0.001
1
6mer
38680-38697
0.001
1
6mer
38960-38983
0.001
1
6mer
39729-39756
0.001
Not Conserved
6mer
12345-12366
0.001
0
6mer
38872-38899
0.001
1
6mer
3695-3714
0.001
0
6mer
18927-18953
0.001
1
6mer
30892-30916
0.001
0
6mer
17670-17694
0.001
1
6mer
11811-11830
0.000
1
XLOC_008866
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018545
Biotype: transcript isomorph
Gene id: XLOC_008866
Gene Name: XLOC_008866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-93
0.032
1
7mer
96-109
0.019
0
7mer
221-235
0.016
0
7mer
351-365
0.015
0
7mer
301-319
0.014
0
7mer
330-346
0.014
0
7mer
280-298
0.014
0
7mer
202-215
0.013
0
7mer
189-194
0.013
0
7mer
261-282
0.013
0
7mer
170-186
0.012
0
7mer
119-124
0.007
Not Conserved
6mer
240-258
0.005
0
XLOC_008328
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
340-349
0.164
0
6mer
125-148
0.014
0
RP11-2L8.1
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450500
Biotype: lincRNA
Gene id: ENSG00000225790
Gene Name: RP11-2L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-354
0.167
9
XLOC_001576
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004852
Biotype: transcript isomorph
Gene id: XLOC_001576
Gene Name: XLOC_001576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-73
0.143
1
6mer
39-54
0.022
1
LINC00663
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-168
0.093
0
8mer
1862-1871
0.046
1
7mer
1010-1034
0.012
0
6mer
1176-1194
0.005
1
6mer
1733-1746
0.004
1
XLOC_008283
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017573
Biotype: transcript isomorph
Gene id: XLOC_008283
Gene Name: XLOC_008283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-529
0.149
0
6mer
792-812
0.003
Not Conserved
TTTY12
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000413466
Biotype: lincRNA
Gene id: ENSG00000237048
Gene Name: TTTY12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-529
0.149
0
6mer
792-812
0.003
Not Conserved
RP11-58A18.2
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621177
Biotype: lincRNA
Gene id: ENSG00000274478
Gene Name: RP11-58A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
410-429
0.143
1
6mer
583-602
0.006
0
XLOC_007131
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015050
Biotype: transcript isomorph
Gene id: XLOC_007131
Gene Name: XLOC_007131
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
362-386
0.138
1
6mer
342-357
0.005
1
6mer
301-325
0.005
1
KCNQ1OT1
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38897-38910
0.016
0
8mer
11095-11109
0.014
1
8mer
42530-42543
0.011
1
7mer
17268-17292
0.008
0
8mer
45175-45197
0.005
1
7mer
49559-49577
0.004
1
8mer
27760-27766
0.004
0
7mer
40020-40035
0.004
0
9mer
31916-31934
0.004
0
7mer
26556-26575
0.004
0
7mer
69102-69127
0.004
1
7mer
57907-57916
0.003
1
7mer
12568-12581
0.003
1
7mer
35223-35240
0.003
0
6mer
91077-91095
0.003
1
7mer
15897-15914
0.002
0
6mer
51077-51091
0.002
1
7mer
29755-29777
0.002
0
6mer
61359-61380
0.002
3
6mer
86534-86560
0.002
1
7mer
44790-44813
0.002
1
6mer
58804-58828
0.002
1
6mer
8989-9004
0.002
1
6mer
28020-28040
0.002
0
6mer
50819-50833
0.002
1
6mer
1440-1458
0.002
1
6mer
48936-48958
0.002
1
7mer
18387-18409
0.002
1
6mer
66145-66166
0.002
1
6mer
1923-1945
0.002
1
6mer
64128-64150
0.001
0
6mer
47742-47755
0.001
1
6mer
73794-73807
0.001
1
6mer
78965-78988
0.001
1
6mer
24837-24848
0.001
1
6mer
5811-5827
0.001
1
6mer
18586-18597
0.001
1
6mer
35783-35794
0.001
0
6mer
44503-44518
0.001
2
6mer
14761-14768
0.001
0
6mer
80503-80516
0.001
1
6mer
37020-37039
0.001
0
6mer
17173-17198
0.001
0
6mer
74896-74913
0.001
1
6mer
58619-58636
0.001
0
6mer
44710-44723
0.001
1
6mer
8832-8845
0.001
0
6mer
17070-17091
0.001
1
6mer
5188-5199
0.001
1
6mer
46339-46353
0.001
0
6mer
18469-18487
0.001
1
LINC01028
hsa-miR-143-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588782
Biotype: lincRNA
Gene id: ENSG00000267603
Gene Name: LINC01028
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
330-343
0.141
8
OIP5-AS1
hsa-miR-143-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560706
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-300
0.134
4
OIP5-AS1
hsa-miR-143-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501665
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
252-276
0.132
4
LINC01206
hsa-miR-143-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9456-9475
0.092
3
8mer
5504-5524
0.018
5
7mer
4027-4047
0.009
2
7mer
3273-3292
0.006
1
7mer
1149-1169
0.003
0
6mer
873-894
0.002
1
6mer
2967-2984
0.001
1
RP3-412A9.17
hsa-miR-143-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11272-11298
0.029
2
7mer
16650-16675
0.023
1
9mer
3451-3475
0.022
1
8mer
11076-11096
0.019
5
7mer
1120-1143
0.008
0
7mer
16349-16369
0.008
0
6mer
16483-16507
0.004
0
6mer
16349-16365
0.003
0
6mer
6356-6360
0.003
3
7mer
6865-6889
0.002
1
6mer
958-976
0.002
0
6mer
1841-1864
0.002
1
6mer
8930-8953
0.002
0
6mer
3255-3270
0.001
Not Conserved
6mer
1923-1949
0.001
1
6mer
2964-2983
0.000
0
XLOC_009222
hsa-miR-143-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4994-5010
0.098
0
7mer
4586-4610
0.026
0
6mer
2753-2775
0.005
0
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